| Filename |
Size |
| htslib
| 5.9M |
| parametersDefault.xxd | 171.1K |
| Parameters.cpp | 68.7K |
| parametersDefault | 27.7K |
| Genome.cpp | 27.0K |
| ReadAlign_chimericDetection.cpp | 25.0K |
| ReadAlign_alignBAM.cpp | 20.9K |
| stitchAlignToTranscript.cpp | 20.0K |
| genomeGenerate.cpp | 18.4K |
| stitchWindowAligns.cpp | 16.4K |
| STAR.cpp | 16.3K |
| loadGTF.cpp | 15.0K |
| SuffixArrayFuns.cpp | 14.2K |
| ReadAlign_stitchPieces.cpp | 13.4K |
| ReadAlign_outputTranscriptSAM.cpp | 12.9K |
| sjdbBuildIndex.cpp | 12.6K |
| ReadAlign_outputAlignments.cpp | 12.5K |
| Parameters.h | 12.3K |
| ReadAlign_stitchWindowSeeds.cpp | 11.6K |
| ReadAlignChunk_processChunks.cpp | 10.7K |
| insertSeqSA.cpp | 10.5K |
| genomeSAindex.cpp | 10.3K |
| sjdbPrepare.cpp | 9.9K |
| bamRemoveDuplicates.cpp | 9.1K |
| signalFromBAM.cpp | 8.4K |
| Stats.cpp | 8.0K |
| BAMoutput.cpp | 7.1K |
| readLoad.cpp | 7.1K |
| outputSJ.cpp | 6.9K |
| ReadAlign.h | 6.9K |
| SharedMemory.cpp | 6.3K |
| SequenceFuns.cpp | 6.2K |
| ReadAlignChunk_mapChunk.cpp | 6.1K |
| Parameters_openReadsFiles.cpp | 6.1K |
| sjdbInsertJunctions.cpp | 6.0K |
| Makefile | 5.9K |
| ReadAlign_storeAligns.cpp | 5.7K |
| ReadAlign_assignAlignToWindow.cpp | 5.5K |
| ReadAlignChunk.cpp | 5.3K |
| Transcriptome_quantAlign.cpp | 5.2K |