| Filename |
Size |
| scanpy_clustering_pub_ver.pdf | 29.6M |
| scanpy_clustering_pub_ver_new.ipynb | 25.4M |
| scanpy_clustering_pub_blood_ver.ipynb | 22.5M |
| scanpy_clustering_pub_ver_all_atlases.ipynb | 19.1M |
| scanpy_clustering_pub_ver.ipynb | 18.5M |
| scanpy_clustering_pub_ver_all_atlases_bootstrapping.ipynb | 826.8K |
| figures
| 519.8K |
| scanpy_single_bootstrap_bbknn.ipynb | 52.7K |
| 1403_scanpy_clustering_plot.py | 22.5K |
| robust_scanpy_cKDtree.py | 21.3K |
| robust_scanpy_integration.py | 20.9K |
| 20250226_scanpy_cKDtree_integration.py | 19.0K |
| scanpy_clustering_whole_FCA.py | 16.3K |
| scanpy_clustering_pub_ver_1.0.py | 16.0K |
| scanpy_clustering_pub_ver_blood_atas.py | 15.4K |
| scanpy_clustering_pub_ver.py | 15.1K |
| scanpy_single_bootstrap_bbknn.py | 11.2K |
| bulk_distance_matrix.csv | 10.9K |
| scanpy_clustering_pub_ver_refactored.py | 9.7K |
| 04022025_scanpy_plot_projected_umap.py | 9.3K |
| scanpy_clustering_bootstrapping.py | 6.7K |
| 12022025_scanpy_clustering_functional_analysis.py | 6.6K |
| 12022025_scanpy_bulk_functional_analysis.py | 6.2K |
| scanpy_clustering_bootstrapping_fixed.py | 5.9K |
| 20250226_subsample_atlas.py | 4.3K |
| import scanpy as sc.py | 4.1K |
| scanpy_single_bootstrap_ingest.py | 3.5K |
| scanpy.yaml | 2.4K |
| csv_to_h5ad.py | 2.0K |
| plot_clustering_CI.py | 1.6K |
| seurat_to_h5ad.R | 1.5K |
| seurat_to_h5ad_old.R | 1.2K |
| scanpy_plot_marker_genes.py | 938 |
| scanpy_slurm.sh | 671 |