| Filename |
Size |
| cromwell-executions
| 52.4G |
| assembly.fasta | 5.7G |
| PAN027.verkko2.1.Q28_k50000.haplotype1.20250425.fasta | 2.8G |
| PAN027.verkko2.1.Q28_k50000.haplotype2.20250425.fasta | 2.8G |
| chr3.assembly.v1.0.PAN027.paternal.fa | 196.4M |
| chr3.PAN027.verkko2.1.Q28_k50000.haplotype2.fasta | 196.4M |
| chr3.PAN027.verkko2.1.Q28_k50000.haplotype1.fasta | 195.3M |
| dotplot_chr3
| 13.6M |
| chr3.assembly.v1.0.PAN027.paternal_chr3.PAN027.verkko2.1.Q28_k50000.haplotype1.sam | 3.9M |
| chr3.mashmap.txt | 204.0K |
| chr3.assembly.v1.0.PAN027.paternal_chr3.PAN027.verkko2.1.Q28_k50000.haplotype2.sam | 153.5K |
| general.evaluate_all_assemblies_general.20240810.8540426.log | 89.9K |
| general.evaluate_all_assemblies_general.20240810.8540425.log | 89.3K |
| out.fplot | 52.7K |
| out.rplot | 52.6K |
| generateDotPlot.txt | 31.4K |
| out.png | 29.4K |
| evaluateHumanAssembly.wdl | 24.6K |
| PAN027.verkko2.1.Q28_k50000.haplotype2.fasta.fai | 3.4K |
| PAN027.verkko2.1.Q28_k50000.haplotype1.fasta.fai | 2.0K |
| rename_fasta_to_chromosome_names.py | 1.6K |
| assembly.v1.0.PAN027.paternal.fa.fai | 1.4K |
| haplotype2.txt | 1.2K |
| evaluate_all_assemblies_general.sh | 1.1K |
| README.txt | 1.0K |
| align_assemblies.sh | 911 |
| PAN027.verkko2.1.Q28_k50000.haplotype2.T2T.scaffolds.txt | 843 |
| PAN027.verkko2.1.Q28_k50000.haplotype1.T2T.scaffolds.txt | 811 |
| chr3.assembly.v1.0.PAN027.paternal_chr3.PAN027.verkko2.1.Q28_k50000.haplotype1.stat.txt | 731 |
| chr3.assembly.v1.0.PAN027.paternal_chr3.PAN027.verkko2.1.Q28_k50000.haplotype2.stat.txt | 706 |
| haplotype1.txt | 684 |
| align_assemblies.20250425.8542361.log | 572 |
| align_assemblies.20250425.8542362.log | 572 |
| out.gp | 455 |
| assembly.v1.0.PAN027.maternal.fa | 120 |
| assembly.v1.0.PAN027.paternal.fa | 120 |
| evaluate.config.Q28_k50000.txt | 111 |
| PAN027.verkko2.1.Q28_k50000.haplotype1.fasta.json | 83 |
| PAN027.verkko2.1.Q28_k50000.haplotype2.fasta.json | 83 |
| chr3.assembly.v1.0.PAN027.paternal.fa.fai | 40 |