| Filename |
Size |
| medaka_consensus.20241209
| 519.6G |
| 09_27_24_R1041_APK_Pedigree_HG06807_1_dorado0.8.1_sup5.0.0_A100.fastq.gz | 96.9G |
| cromwell-executions
| 46.8G |
| NCM.Q28.unpolished.fasta.map-ont.mmi | 12.8G |
| NCM.Q28.unpolished.fasta | 5.6G |
| NCM.Q28.unpolished.homopolymer-compressed.gfa | 4.0G |
| NCM.Q28.unpolished.haplotype1.fasta | 2.8G |
| NCM.Q28.unpolished.haplotype2.fasta | 2.8G |
| raw_versus_polished_comparison
| 967.9M |
| APK.lengths.txt | 860.1M |
| chr1.raw.NCM.Q28.medaka.polished.haplotype1.fa | 240.2M |
| NCM.Q28.unpolished.homopolymer-compressed.layout | 104.2M |
| NCM.Q28.unpolished.rdna.fasta | 58.3M |
| NCM.Q28.unpolished.unassigned.fasta | 5.9M |
| NCM.Q28.unpolished.disconnected.fasta | 2.5M |
| run_medaka.20241212.5987624.log | 2.0M |
| NCM.Q28.unpolished.ebv.fasta | 1.9M |
| run_medaka.20241212.5909992.log | 1.8M |
| quast_results
| 1.3M |
| run_medaka.20241209.5890450.log | 1.2M |
| run_medaka.20241212.5984578.log | 1.0M |
| run_medaka.20241209.5830949.log | 429.5K |
| NCM.Q28.unpolished.ebv.exemplar.fasta | 362.2K |
| NCM.Q28.unpolished.homopolymer-compressed.noseq.gfa | 203.5K |
| NCM.Q28.unpolished.mito.fasta | 157.4K |
| NCM.Q28.unpolished.rdna.exemplar.fasta | 89.3K |
| general.evaluate_all_assemblies_general.20240810.5409502.log | 86.0K |
| general.evaluate_all_assemblies_general.20240810.5409503.log | 85.6K |
| NCM.Q28.unpolished.paths.tsv | 47.4K |
| NCM.Q28.unpolished.scfmap | 42.6K |
| evaluateHumanAssembly.wdl | 24.6K |
| run_medaka.20241111.5438644.log | 20.2K |
| NCM.Q28.unpolished.mito.exemplar.fasta | 16.5K |
| run_medaka.20241111.5434256.log | 16.1K |
| run_medaka.20241212.5984576.log | 15.4K |
| run_medaka.20241212.5984572.log | 15.0K |
| run_medaka.20241111.5425402.log | 14.0K |
| NCM.Q28.unpolished.colors.csv | 11.9K |
| NCM.Q28.unpolished.fasta.fai | 6.4K |
| extract_reads.20240811.5409485.log | 4.2K |