| Filename |
Size |
| hg002v0.9.fasta | 5.7G |
| CpG_coordinates_hg002v0.9.fasta.bed | 4.6G |
| hg002v0.9.fasta.gz | 1.6G |
| chr9.CpG_coordinates_hg002v0.9.fasta.bed | 243.2M |
| chr9.HG002_5mC_pileup_highconf_modPERC80.bed | 184.7M |
| 5mC_without_5hmC | 184.7M |
| canonicalC.bed | 162.4M |
| dorado.unfiltered.modbam.both.bam.bai | 58.1M |
| dorado.unfiltered.modbam.5mC.bam.bai | 58.0M |
| dorado.unfiltered.modbam.5hmC.bam.bai | 58.0M |
| guppy.unfiltered.modbam.both.bam.bai | 49.4M |
| guppy.unfiltered.modbam.5mC.bam.bai | 49.3M |
| guppy.unfiltered.modbam.5hmC.bam.bai | 49.3M |
| guppy.modbam.nomod.bam.bai | 49.1M |
| dorado.filtered.modbam.5hmC.bam.bai | 28.9M |
| HG002_5hmC_pileup_highconf_modPERC80.bed | 4.2M |
| mpileup
| 3.4M |
| 5hmC.bed | 1.6M |
| test
| 702.7K |
| parse_bam_file.sh.20240109.1659797.log | 699.2K |
| parse_bam_file.sh.20240109.1659798.log | 651.8K |
| parse_bam_file.sh.20240109.1659796.log | 641.7K |
| 5hmC_without_5mC.bed | 544.5K |
| chr9.HG002_5hmC_pileup_highconf_modPERC80.bed | 544.5K |
| mpileup_guppy.modbam.nomod.bam.5mC_without_5hmC.txt | 102.0K |
| mpileup_guppy.modbam.nomod.bam.canonicalC.bed.txt | 95.8K |
| mpileup_guppy.modbam.nomod.bam.5hmC_without_5mC.bed.txt | 81.3K |
| README.txt | 3.1K |
| hg002v0.9.fasta.fai | 1.9K |
| parse_bam_file.sh | 1.3K |
| get_CpG_coordinates.sh | 1.3K |
| READMEII.txt | 1.1K |
| base_quality_to_numerical.py | 851 |
| boxplot_script.R | 592 |
| calculate_coverage.sh | 523 |
| dorado.filtered.modbam.5hmC.bam | 176 |
| dorado.unfiltered.modbam.5hmC.bam | 167 |
| dorado.unfiltered.modbam.5mC.bam | 166 |
| HG002_5mC_pileup_highconf_modPERC80.bed | 148 |
| dorado.unfiltered.modbam.both.bam | 142 |