| Filename |
Size |
| merged.vcf | 304.1M |
| tmp_dir
| 300.6M |
| filtered_vcfs
| 111.7M |
| pfgt_covar_masked.npy | 12.2M |
| 25x_masked_pca.html | 3.4M |
| 25x_50_masked_pca.html | 3.4M |
| hq_projceted_pca.tsv | 290.6K |
| comm_pca.png | 228.3K |
| hq_proj.png | 149.8K |
| pca_50.png | 98.0K |
| umap_50.png | 77.7K |
| ethn_comm.txt | 54.2K |
| logs
| 34.9K |
| 25x_masked_50_method_1.tsv | 27.7K |
| 25x_50_covar.npy | 23.3K |
| unrelated_ethnic.txt | 23.2K |
| 25x_masked_20_method_1.tsv | 18.0K |
| plot_pca_w_map.py | 5.2K |
| proj_pca.py | 4.4K |
| 25x_pop_labels.tsv | 4.0K |
| plot_pca_present.py | 3.3K |
| plot_umap.py | 2.8K |
| plot_pca_comm.py | 2.1K |
| 25x_ids_in_pfgt_masked_50.txt | 1.4K |
| mdpca.py | 973 |
| params.txt | 613 |
| filter_vcfs.sh | 594 |
| pfgt_masked_50_method_1_unweighted_covar.npy | 51 |
| pfgt_vep_replicate | 50 |
| 25x_ids.txt | 45 |
| pfgt_masked_50_method_1_unweighted.tsv | 45 |
| pfgt_merged_snd_deg_rm.vcf.gz | 45 |
| unrelated_ethnic_w_na.txt | 32 |
| 25x_10 | 28 |
| mdPCA | 13 |