| Filename |
Size |
| mergeSamplesPlagueScreening.yPestis.fullchr.fasta | 2.0G |
| onlyhighcov.vcf | 162.4M |
| lowcov
| 122.6M |
| lowcov.mpileup.gz | 30.2M |
| old
| 8.8M |
| onlyhighcov.json | 7.7M |
| GCF_000009065.1_ASM906v1_genomic.fna | 4.7M |
| NC_003143.1.fa | 4.5M |
| onlyhighcov.usher.err | 4.1M |
| onlyhighcov.pb.gz | 1.5M |
| usher_placements
| 776.6K |
| lowcov.vcf | 701.2K |
| lowcov_allsites.vcf.gz | 243.0K |
| lowcov_merge.vcf.gz | 58.2K |
| highMq0_2x.mergeSG.yPestis.bed | 46.6K |
| lowcov_noprivate.vcf.gz | 40.9K |
| lowcov_existingsites.vcf.gz | 24.9K |
| mergeSamplesPlagueScreening.yPestis.snpsonly.raxml.bestTree | 16.0K |
| final-tree.nh | 13.8K |
| lowcov.mpileup.gz.tbi | 3.2K |
| lowcov_allsites.vcf.gz.tbi | 2.3K |
| lowcov_noprivate.vcf.gz.tbi | 2.3K |
| lowcov_merge.vcf.gz.tbi | 2.3K |
| lowcov_existingsites.vcf.gz.tbi | 2.2K |
| run.sh | 1.9K |
| run_ACTUAL.sh | 1.9K |
| GCF_000009065.1_ASM906v1_genomic.dict | 664 |
| GCF_000009065.1_ASM906v1_genomic.fna.fai | 124 |
| NC_003143.1.fa.fai | 29 |
| onlyhighcov.usher.log | 0 |