| Filename |
Size |
| collapsed.annotated_transcripts.fa | 8.2M |
| logs
| 2.1M |
| clair3_output
| 1.5M |
| fixed_clair3
| 1.5M |
| align.bam | 1.0M |
| fixed_quantify.sample3.badread5X.c1.flair.aligned.bam | 888.6K |
| quantify.sample3.badread5X.c1.flair.aligned.bam | 888.6K |
| collapsed.annotated_transcripts.bed | 721.1K |
| intermediate_results_dir
| 522.9K |
| collapsed.isoforms.fa | 283.6K |
| filtered_isoforms.fa | 281.5K |
| collapsed.unassigned.fasta | 162.0K |
| collapsed.isoforms.gtf | 155.7K |
| align.bed | 132.9K |
| corrected_all_corrected.bed | 125.7K |
| sample3.badread5X.genome.deepvariant.g.vcf.gz | 124.1K |
| collapsed.firstpass.fa | 102.0K |
| clair3_genome
| 82.6K |
| sample3.badread5X.deepvariant.g.vcf.gz | 77.9K |
| fixed_sample3.badread5X.deepvariant.g.vcf.gz | 77.3K |
| collapsed.annotated_transcripts.isoform.read.map.txt | 33.7K |
| collapsed.combined.isoform.read.map.txt | 33.7K |
| fixed_quantify.sample3.badread5X.c1.isoform.read.map.txt | 33.2K |
| quantify.sample3.badread5X.c1.isoform.read.map.txt | 33.2K |
| collapsed.isoforms.bed | 26.7K |
| filtered_transcripts.bed | 26.4K |
| align.bam.bai | 26.0K |
| collapsed.annotated_transcripts.supported.bed | 24.7K |
| align_trash.bam.bai | 24.4K |
| collapsed.unassigned.bed | 16.9K |
| align_trash.bam | 13.6K |
| fixed_quantify.sample3.badread5X.c1.flair.aligned.bam.bai | 13.5K |
| quantify.sample3.badread5X.c1.flair.aligned.bam.bai | 13.5K |
| collapsed.firstpass.unfiltered.bed | 12.3K |
| collapsed.firstpass.bed | 10.5K |
| filtered_isoforms.fa.fai | 9.7K |
| corrected_all_inconsistent.bed | 7.2K |
| collapsed.annotated_transcripts.alignment.counts | 7.1K |
| fixed_quantify.counts.tsv | 6.9K |
| quantify.counts.tsv | 6.9K |