| Filename |
Size |
| collapsed.annotated_transcripts.fa | 8.2M |
| align.bam | 7.2M |
| fixed_quantify.sample3.badread40X.c1.flair.aligned.bam | 6.1M |
| quantify.sample3.badread40X.c1.flair.aligned.bam | 6.1M |
| intermediate_results_dir
| 4.3M |
| logs
| 2.5M |
| fixed_clair3
| 1.7M |
| clair3_output
| 1.7M |
| collapsed.unassigned.fasta | 1.2M |
| align.bed | 1002.8K |
| corrected_all_corrected.bed | 943.5K |
| collapsed.annotated_transcripts.bed | 721.1K |
| collapsed.isoforms.fa | 324.1K |
| filtered_isoforms.fa | 319.2K |
| collapsed.firstpass.fa | 270.4K |
| collapsed.combined.isoform.read.map.txt | 219.3K |
| fixed_quantify.sample3.badread40X.c1.isoform.read.map.txt | 218.1K |
| quantify.sample3.badread40X.c1.isoform.read.map.txt | 218.1K |
| collapsed.annotated_transcripts.isoform.read.map.txt | 215.6K |
| collapsed.isoforms.gtf | 171.7K |
| sample3.badread40X.genome.deepvariant.g.vcf.gz | 170.6K |
| align_trash.bam | 146.0K |
| collapsed.unassigned.bed | 114.5K |
| sample3.badread40X.deepvariant.g.vcf.gz | 112.6K |
| fixed_sample3.badread40X.deepvariant.g.vcf.gz | 102.8K |
| clair3_genome
| 73.7K |
| corrected_all_inconsistent.bed | 59.4K |
| collapsed.firstpass.unfiltered.bed | 55.8K |
| collapsed.isoforms.bed | 29.6K |
| filtered_transcripts.bed | 29.3K |
| collapsed.annotated_transcripts.supported.bed | 27.5K |
| align.bam.bai | 27.0K |
| align_trash.bam.bai | 25.2K |
| collapsed.firstpass.bed | 24.6K |
| fixed_quantify.sample3.badread40X.c1.flair.aligned.bam.bai | 15.1K |
| quantify.sample3.badread40X.c1.flair.aligned.bam.bai | 15.1K |
| filtered_isoforms.fa.fai | 10.8K |
| fixed_quantify.counts.tsv | 7.9K |
| quantify.counts.tsv | 7.9K |
| collapsed.annotated_transcripts.alignment.counts | 7.5K |