| Filename |
Size |
| collapsed.annotated_transcripts.fa | 8.2M |
| logs
| 2.1M |
| fixed_clair3
| 1.5M |
| clair3_output
| 1.5M |
| align.bam | 1.2M |
| fixed_quantify.sample2.badread5X.c1.flair.aligned.bam | 973.6K |
| quantify.sample2.badread5X.c1.flair.aligned.bam | 973.6K |
| collapsed.annotated_transcripts.bed | 721.1K |
| intermediate_results_dir
| 568.6K |
| collapsed.isoforms.fa | 307.7K |
| filtered_isoforms.fa | 307.2K |
| collapsed.unassigned.fasta | 229.8K |
| sample2.badread5X.genome.deepvariant.g.vcf.gz | 152.9K |
| collapsed.isoforms.gtf | 149.3K |
| collapsed.firstpass.fa | 147.6K |
| align.bed | 131.1K |
| corrected_all_corrected.bed | 125.6K |
| sample2.badread5X.deepvariant.g.vcf.gz | 86.9K |
| fixed_sample2.badread5X.deepvariant.g.vcf.gz | 85.9K |
| clair3_genome
| 85.7K |
| align_trash.bam | 60.3K |
| collapsed.annotated_transcripts.isoform.read.map.txt | 32.2K |
| collapsed.combined.isoform.read.map.txt | 31.9K |
| fixed_quantify.sample2.badread5X.c1.isoform.read.map.txt | 31.7K |
| quantify.sample2.badread5X.c1.isoform.read.map.txt | 31.7K |
| align.bam.bai | 25.6K |
| collapsed.isoforms.bed | 25.5K |
| filtered_transcripts.bed | 25.3K |
| align_trash.bam.bai | 24.4K |
| collapsed.annotated_transcripts.supported.bed | 23.0K |
| collapsed.unassigned.bed | 19.7K |
| collapsed.firstpass.unfiltered.bed | 14.7K |
| collapsed.firstpass.bed | 13.2K |
| fixed_quantify.sample2.badread5X.c1.flair.aligned.bam.bai | 12.9K |
| quantify.sample2.badread5X.c1.flair.aligned.bam.bai | 12.9K |
| filtered_isoforms.fa.fai | 9.3K |
| collapsed.annotated_transcripts.alignment.counts | 6.8K |
| fixed_quantify.counts.tsv | 6.6K |
| quantify.counts.tsv | 6.6K |
| .DS_Store | 6.0K |