| Filename |
Size |
| collapsed.annotated_transcripts.fa | 8.2M |
| align.bam | 4.8M |
| fixed_quantify.sample2.badread20X.c1.flair.aligned.bam | 3.9M |
| quantify.sample2.badread20X.c1.flair.aligned.bam | 3.9M |
| intermediate_results_dir
| 2.3M |
| logs
| 2.2M |
| fixed_clair3
| 1.8M |
| clair3_output
| 1.8M |
| collapsed.unassigned.fasta | 1.2M |
| collapsed.annotated_transcripts.bed | 721.1K |
| align.bed | 556.7K |
| corrected_all_corrected.bed | 527.7K |
| collapsed.isoforms.fa | 389.1K |
| filtered_isoforms.fa | 388.0K |
| collapsed.firstpass.fa | 328.7K |
| sample2.badread20X.deepvariant.g.vcf.gz | 247.5K |
| fixed_sample2.badread20X.deepvariant.g.vcf.gz | 242.7K |
| sample2.badread20X.genome.deepvariant.g.vcf.gz | 203.7K |
| collapsed.isoforms.gtf | 181.8K |
| collapsed.combined.isoform.read.map.txt | 119.2K |
| fixed_quantify.sample2.badread20X.c1.isoform.read.map.txt | 118.3K |
| quantify.sample2.badread20X.c1.isoform.read.map.txt | 118.3K |
| collapsed.annotated_transcripts.isoform.read.map.txt | 114.4K |
| collapsed.unassigned.bed | 91.9K |
| clair3_genome
| 65.2K |
| collapsed.firstpass.unfiltered.bed | 45.5K |
| align_trash.bam | 42.3K |
| collapsed.isoforms.bed | 30.4K |
| filtered_transcripts.bed | 30.1K |
| corrected_all_inconsistent.bed | 29.0K |
| collapsed.annotated_transcripts.supported.bed | 27.8K |
| align.bam.bai | 26.4K |
| collapsed.firstpass.bed | 25.7K |
| align_trash.bam.bai | 24.7K |
| fixed_quantify.sample2.badread20X.c1.flair.aligned.bam.bai | 15.1K |
| quantify.sample2.badread20X.c1.flair.aligned.bam.bai | 15.1K |
| collapsed.isoforms.fa.fai | 11.0K |
| filtered_isoforms.fa.fai | 10.8K |
| fixed_quantify.counts.tsv | 7.9K |
| quantify.counts.tsv | 7.9K |