| Filename |
Size |
| collapsed.annotated_transcripts.fa | 8.2M |
| logs
| 2.0M |
| clair3.sample1.badread5X.vcf
| 1.5M |
| clair3_output
| 1.5M |
| fixed_clair3
| 1.5M |
| align.bam | 1.0M |
| sample1.badread5X.genome.deepvariant.g.vcf | 934.8K |
| quantify.sample1.badread5X.c1.flair.aligned.bam | 895.1K |
| fixed_quantify.sample1.badread5X.c1.flair.aligned.bam | 894.9K |
| collapsed.annotated_transcripts.bed | 721.1K |
| intermediate_results_dir
| 460.3K |
| collapsed.isoforms.fa | 281.9K |
| filtered_isoforms.fa | 281.2K |
| collapsed.unassigned.fasta | 184.4K |
| collapsed.isoforms.gtf | 152.6K |
| align.bed | 121.8K |
| corrected_all_corrected.bed | 117.5K |
| collapsed.firstpass.fa | 101.4K |
| clair3_genome
| 77.9K |
| sample1.badread5X.deepvariant.g.vcf.gz | 75.5K |
| fixed_sample1.badread5X.deepvariant.g.vcf.gz | 74.4K |
| collapsed.annotated_transcripts.isoform.read.map.txt | 32.2K |
| collapsed.combined.isoform.read.map.txt | 31.4K |
| fixed_quantify.sample1.badread5X.c1.isoform.read.map.txt | 31.1K |
| quantify.sample1.badread5X.c1.isoform.read.map.txt | 31.1K |
| SNV_sample1.badread5X.deepvariant.vcf | 28.9K |
| align.bam.bai | 25.8K |
| collapsed.isoforms.bed | 25.6K |
| filtered_transcripts.bed | 25.4K |
| align_trash.bam.bai | 24.6K |
| collapsed.annotated_transcripts.supported.bed | 23.7K |
| align_trash.bam | 20.4K |
| fixed_quantify.sample1.badread5X.c1.flair.aligned.bam.bai | 12.8K |
| quantify.sample1.badread5X.c1.flair.aligned.bam.bai | 12.8K |
| collapsed.unassigned.bed | 11.7K |
| filtered_isoforms.fa.fai | 9.2K |
| collapsed.firstpass.unfiltered.bed | 8.5K |
| .DS_Store | 8.0K |
| collapsed.firstpass.bed | 7.9K |
| collapsed.annotated_transcripts.alignment.counts | 7.0K |