| Filename |
Size |
| collapsed.annotated_transcripts.fa | 8.2M |
| align.bam | 7.4M |
| fixed_quantify.sample1.badread40X.c1.flair.aligned.bam | 6.2M |
| quantify.sample1.badread40X.c1.flair.aligned.bam | 6.2M |
| intermediate_results_dir
| 4.1M |
| logs
| 2.5M |
| fixed_clair3
| 1.7M |
| clair3_output
| 1.7M |
| collapsed.unassigned.fasta | 1.5M |
| align.bed | 1.0M |
| corrected_all_corrected.bed | 988.3K |
| collapsed.annotated_transcripts.bed | 721.1K |
| collapsed.isoforms.fa | 333.2K |
| filtered_isoforms.fa | 332.0K |
| collapsed.firstpass.fa | 298.2K |
| collapsed.combined.isoform.read.map.txt | 222.2K |
| fixed_quantify.sample1.badread40X.c1.isoform.read.map.txt | 220.7K |
| quantify.sample1.badread40X.c1.isoform.read.map.txt | 220.7K |
| collapsed.annotated_transcripts.isoform.read.map.txt | 217.3K |
| align_trash.bam | 195.0K |
| collapsed.isoforms.gtf | 180.1K |
| collapsed.unassigned.bed | 129.6K |
| sample1.badread40X.deepvariant.g.vcf.gz | 108.6K |
| sample1.badread40X.genome.deepvariant.g.vcf.gz | 106.3K |
| fixed_sample1.badread40X.deepvariant.g.vcf.gz | 99.8K |
| clair3_genome
| 61.1K |
| collapsed.firstpass.unfiltered.bed | 58.9K |
| corrected_all_inconsistent.bed | 45.0K |
| collapsed.isoforms.bed | 30.3K |
| filtered_transcripts.bed | 30.0K |
| collapsed.annotated_transcripts.supported.bed | 28.2K |
| align.bam.bai | 27.1K |
| collapsed.firstpass.bed | 26.6K |
| align_trash.bam.bai | 25.5K |
| fixed_quantify.sample1.badread40X.c1.flair.aligned.bam.bai | 15.2K |
| quantify.sample1.badread40X.c1.flair.aligned.bam.bai | 15.2K |
| filtered_isoforms.fa.fai | 10.9K |
| fixed_quantify.counts.tsv | 8.0K |
| quantify.counts.tsv | 8.0K |
| collapsed.annotated_transcripts.alignment.counts | 7.5K |