| Filename |
Size |
| collapsed.annotated_transcripts.fa | 8.2M |
| align.bam | 3.8M |
| fixed_quantify.sample1.badread20X.c1.flair.aligned.bam | 3.3M |
| quantify.sample1.badread20X.c1.flair.aligned.bam | 3.3M |
| logs
| 2.3M |
| intermediate_results_dir
| 1.8M |
| fixed_clair3
| 1.8M |
| clair3_output
| 1.8M |
| collapsed.annotated_transcripts.bed | 721.1K |
| collapsed.unassigned.fasta | 648.1K |
| align.bed | 518.8K |
| corrected_all_corrected.bed | 500.8K |
| collapsed.isoforms.fa | 330.7K |
| filtered_isoforms.fa | 329.5K |
| collapsed.firstpass.fa | 227.3K |
| sample1.badread20X.deepvariant.g.vcf.gz | 223.7K |
| fixed_sample1.badread20X.deepvariant.g.vcf.gz | 220.0K |
| collapsed.isoforms.gtf | 178.6K |
| sample1.badread20X.genome.deepvariant.g.vcf.gz | 172.0K |
| collapsed.combined.isoform.read.map.txt | 115.9K |
| fixed_quantify.sample1.badread20X.c1.isoform.read.map.txt | 115.1K |
| quantify.sample1.badread20X.c1.isoform.read.map.txt | 115.1K |
| collapsed.annotated_transcripts.isoform.read.map.txt | 114.0K |
| align_trash.bam | 92.5K |
| clair3_genome
| 66.4K |
| collapsed.unassigned.bed | 60.3K |
| collapsed.firstpass.unfiltered.bed | 35.1K |
| collapsed.isoforms.bed | 30.0K |
| filtered_transcripts.bed | 29.7K |
| collapsed.annotated_transcripts.supported.bed | 28.1K |
| align.bam.bai | 26.0K |
| align_trash.bam.bai | 24.9K |
| collapsed.firstpass.bed | 20.3K |
| corrected_all_inconsistent.bed | 18.1K |
| fixed_quantify.sample1.badread20X.c1.flair.aligned.bam.bai | 15.1K |
| quantify.sample1.badread20X.c1.flair.aligned.bam.bai | 15.1K |
| filtered_isoforms.fa.fai | 10.8K |
| fixed_quantify.counts.tsv | 7.9K |
| quantify.counts.tsv | 7.9K |
| collapsed.annotated_transcripts.alignment.counts | 7.4K |