| Filename |
Size |
| collapsed.annotated_transcripts.fa | 8.2M |
| logs
| 2.3M |
| align.bam | 2.0M |
| fixed_clair3
| 1.7M |
| clair3_output
| 1.7M |
| quantify.sample1.badread10X.c1.flair.aligned.bam | 1.6M |
| fixed_quantify.sample1.badread10X.c1.flair.aligned.bam | 1.6M |
| intermediate_results_dir
| 955.8K |
| collapsed.annotated_transcripts.bed | 721.1K |
| collapsed.unassigned.fasta | 387.2K |
| collapsed.isoforms.fa | 323.9K |
| filtered_isoforms.fa | 323.2K |
| align.bed | 260.3K |
| corrected_all_corrected.bed | 248.2K |
| collapsed.firstpass.fa | 191.2K |
| sample1.badread10X.genome.deepvariant.g.vcf.gz | 186.8K |
| collapsed.isoforms.gtf | 174.2K |
| sample1.badread10X.deepvariant.g.vcf.gz | 146.3K |
| fixed_sample1.badread10X.deepvariant.g.vcf.gz | 145.7K |
| clair3_genome
| 87.5K |
| collapsed.combined.isoform.read.map.txt | 60.0K |
| fixed_quantify.sample1.badread10X.c1.isoform.read.map.txt | 59.4K |
| quantify.sample1.badread10X.c1.isoform.read.map.txt | 59.4K |
| collapsed.annotated_transcripts.isoform.read.map.txt | 59.3K |
| SNV_sample1.badread10X.deepvariant.vcf | 34.4K |
| collapsed.unassigned.bed | 32.9K |
| collapsed.isoforms.bed | 29.4K |
| filtered_transcripts.bed | 29.3K |
| collapsed.annotated_transcripts.supported.bed | 27.4K |
| align.bam.bai | 25.8K |
| align_trash.bam.bai | 24.3K |
| collapsed.firstpass.unfiltered.bed | 22.6K |
| align_trash.bam | 20.0K |
| collapsed.firstpass.bed | 16.8K |
| fixed_quantify.sample1.badread10X.c1.flair.aligned.bam.bai | 14.9K |
| quantify.sample1.badread10X.c1.flair.aligned.bam.bai | 14.9K |
| corrected_all_inconsistent.bed | 12.1K |
| sample1.badread10X.genome.deepvariant.vcf.gz | 11.8K |
| filtered_isoforms.fa.fai | 10.7K |
| fixed_quantify.counts.tsv | 7.6K |