| Filename |
Size |
| 241107_gene_coverage.tsv | 567.9M |
| .ipynb_checkpoints
| 52.6M |
| sbatch
| 50.7M |
| 250226_develop_nuc_count_function.ipynb | 30.2M |
| 240513_unique.500_all_sig.bed | 12.8M |
| 250306_plot_nuc_at_individual_loci.ipynb | 3.4M |
| 241122_find_DE_DIU_gene_ends_teloprime.ipynb | 2.3M |
| 250413_correlation_between_teloprimeRNA_totRNA.ipynb | 1.9M |
| 241113_plot_agg_with_different_cutoff.ipynb | 1.5M |
| 240924_plot_aggregates_for_all_samples.ipynb | 1.3M |
| 241031_DAR_with_150bp_window.ipynb | 1.2M |
| 250308_compare_nuc_calling_between_samples.ipynb | 1.0M |
| 250127_train_HMM_compare_nuc_calling_methods.ipynb | 904.0K |
| 240329_totalRNA_DESeq_analysis.ipynb | 803.8K |
| 240405_correlation_between_lrRNA_totRNA.ipynb | 714.3K |
| 250331_correlation_nuc_config_isoform_usage.ipynb | 631.9K |
| 240226_binarize_gene_ends_count_matries.ipynb | 585.9K |
| 241022_DAR_with_25bp_window.ipynb | 569.6K |
| 250407_agg_nuc_change_in_intron_exon_junction.ipynb | 562.4K |
| 250206_distance_between_6mA_sites.ipynb | 489.3K |
| 250319_correlate_nuc_positioning_with_isoform_changes.ipynb | 452.4K |
| 241107_find_genes_with_no_full_length_coverage.ipynb | 392.9K |
| 250315_differential_nuc_count_wt_mut.ipynb | 389.2K |
| 250331_compare_6mA_from_codes_to_fibertools.ipynb | 332.9K |
| 250314_try_nuc_count_on_full_dataset.ipynb | 312.9K |
| 250416_agg_nuc_with_gene_expr.ipynb | 283.3K |
| 250319_differential_nuc_partial_full.ipynb | 266.9K |
| 240319_nuc_positioning_with_gene_ends.ipynb | 262.7K |
| 240206_DAR_analysis_with_gene.ipynb | 244.7K |
| 241121_readlength_distribution_teloprime_nascentRNA.ipynb | 174.9K |
| 240119_modbam_preprocessing.ipynb | 174.0K |
| 250227_marathon_lrRNA-coverage.ipynb | 164.4K |
| 250306_distribution_of_6mA_scores_in_all_samples.ipynb | 128.0K |
| 241029_plot_single_loci_6mA.ipynb | 120.9K |
| 250415_flair_diff_exp_alternative_splicing.ipynb | 118.9K |
| 250311_group_genes_by_ends_ttest.ipynb | 115.9K |
| 240221_DAR_analysis_with_replicates.ipynb | 111.6K |
| 241106_decide_cutoff_macs3_peakcalling.ipynb | 110.2K |
| 240924_QC_primarily_mapped_reads.ipynb | 104.1K |
| 241112_comparing_methylation_calling_between_different_samples.ipynb | 99.2K |