| Filename |
Size |
| sbatch
| 4.0G |
| 240805_nuc_clusrtered_6mA_wt_rep1_sub0.01.pdf | 135.8M |
| 240805_tss_clusrtered_chrII_all_nuc.pdf | 127.7M |
| 240805_tss_clusrtered_chrII_reverse_nuc.pdf | 114.4M |
| .ipynb_checkpoints
| 114.3M |
| 240806_clusrtered_chrII_all_nuc_sub5000.pdf | 108.1M |
| 240805_tss_clusrtered_chrII_forward_nuc.pdf | 104.3M |
| 240806_240806_predict_sub1000_step200_sub1000_nuc_clustered.pdf | 31.6M |
| 221207_load_and_validate-addseq.ipynb | 25.6M |
| 221207_load_and_validate-addseq-Copy1.ipynb | 25.6M |
| 221207_load_and_validate-memlrseq.ipynb | 25.6M |
| 231127_train_convnnt.ipynb | 2.9M |
| 240829_shared_reads_from_titri_pos.ipynb | 2.2M |
| 240912_refine_single_loci_selection.ipynb | 2.2M |
| 240106_plot_rdn_locus.ipynb | 1.9M |
| brandon_old
| 1.5M |
| 230329_addseq_predicted_probability_for_random_5_reads.ipynb | 1.5M |
| 240723_predict_with_stranded_model.ipynb | 1.3M |
| 240301_plot_more_loci.ipynb | 1.1M |
| 240818_dorado_chrom_single_loci.ipynb | 1.1M |
| 240807_fix_strandness_in_parquet.ipynb | 1.0M |
| 231128_train_resnet1d.ipynb | 998.2K |
| 231009_assign_scores_toA_and_visualize.ipynb | 937.4K |
| 240725_make_prediction_on_CLN2.ipynb | 928.9K |
| 240105_plot_gene_tracks.ipynb | 925.7K |
| 230328_run_neural_network_code.ipynb | 897.0K |
| 240522_test_impact_of_strandness.ipynb | 875.9K |
| 240805_tss_clusrtered.pdf | 841.5K |
| 250303_r10_kmer_analysis.ipynb | 815.4K |
| 240923_rank_kmer_by_ks_stat.ipynb | 782.7K |
| 240925_rank_kmer_by_ks_std.ipynb | 712.4K |
| 240818_plot_single_loci_using_dorado_basecalled_data.ipynb | 700.1K |
| 240806_clusrtered_chrII_all_nuc_sub150.pdf | 675.0K |
| 220108_code_to_format_input.ipynb | 662.1K |
| 240531_sphe_prediction.ipynb | 650.8K |
| 240301_addseq_more_loci.ipynb | 639.0K |
| 231215_try_tss_nuc_visualization.ipynb | 625.5K |
| 240731_motif_analysis.ipynb | 620.6K |
| 240725_make_prediction_on_chrII.ipynb | 596.4K |
| 240731_make_prediction_using_control_data.ipynb | 588.4K |