| Filename |
Size |
| dy9mer.bed | 27.7M |
| chromPredVariableTesting.png | 380.4K |
| chromPredVariableTesting_2.png | 308.4K |
| dy9mer_tss_agg.png | 175.5K |
| +1Nucs.bed | 163.8K |
| dy9mer_tss_agg.tsv | 46.7K |
| modbamvisualization-08-22-23.py | 43.9K |
| modbamvisualization-RDNlocus.py | 43.0K |
| modbamvisualization.py | 42.5K |
| modbamvisualization-08-18-23.py | 40.7K |
| modbamvisualization08-04-23.py | 28.3K |
| simulatechromatin.py | 24.0K |
| modbamvisualization-08-03-23.py | 20.8K |
| simulatemodscoresfromchrompeakbed-addkmerdist.py | 17.4K |
| getqualandmodscore.py | 15.6K |
| modbamtestcluster.py | 14.1K |
| bamtonucpred.py | 12.9K |
| modbampredictnucsw.py | 12.5K |
| modbampredictnucsw-10-11-23.py | 12.3K |
| modbampredictnuc-sw.py | 12.1K |
| bamtonucpred-forjulia.py | 11.6K |
| __pycache__
| 11.3K |
| modbamoverlaybed.py | 10.2K |
| simulatemodscoresfromchrompeakbed.py | 10.1K |
| modbamtesthmm.py | 9.8K |
| modbamtesthmm-gaussian.py | 9.3K |
| modbamexplore.py | 9.0K |
| visualizeBaseQuals.py | 8.2K |
| evaluateSimulatedChromatin_multiprocessing.py | 7.6K |
| testpolyAtracts.py | 7.5K |
| modbamtobedgraph.py | 7.3K |
| modbamexplore-singleRead.py | 6.7K |
| trainhmmfromrealdata.py | 6.4K |
| trainhmmfromrealdata-forJulia.py | 6.2K |
| .DS_Store | 6.0K |
| evaluateSimulatedChromatin.py | 5.6K |
| modbamToKmerScores.py | 5.1K |
| predictthreshold.py | 4.9K |
| trainhmmfromrealdata-unthresholded.py | 4.3K |
| ._+1Nucs.bed | 4.0K |