| Filename |
Size |
| offline_analysis
| 4.2G |
| slurm_test_job
| 739.3M |
| database_src
| 543.6M |
| figures_src
| 83.0K |
| runtime_details.log | 50.0K |
| .neoantigen_BA_predictions_slurm.sh.swp | 12.0K |
| slurm_job
| 8.2K |
| generate_COSMIC_peptide_positions.py | 4.6K |
| generate_COSMIC_fasta.py | 4.0K |
| summary_COSMIC.py | 3.8K |
| Data_append.py | 2.7K |
| summary_oncogenic.py | 2.2K |
| generate_mut_HGVSP.py | 1.8K |
| check_tsv_files.sh | 1.7K |
| neoantigen_BA_predictions.sh | 1.7K |
| neoantigen_BA_predictions_slurm.sh | 1.6K |
| fix_hla.py | 1.5K |
| run_COSMIC_TEST.sh~ | 1.4K |
| run_COSMIC_TEST.sh | 1.3K |
| run_COSMIC_1st200.sh | 1.3K |
| run_COSMIC_2nd200.sh | 1.3K |
| run_COSMIC_3rd229.sh | 1.2K |
| run_oncogenic_virus.sh | 1.2K |
| run_onc_bacteria.sh | 1.2K |
| run_oncogenic_subset2.sh | 1.1K |
| run_bacteria_set1.sh | 1.1K |
| run_bacteria_set2.sh | 1.1K |
| run_TASdb_vir.sh | 1.1K |
| run_oncogenic_subset3.sh | 1.0K |
| time_Cosmic_slurm.sh | 1.0K |
| run_oncogenic_parasites_prediction.sh | 1007 |
| run_pred_pat50.sh | 1007 |
| run_neoantigen_predictions.sh | 1001 |
| README | 947 |
| map_cancer_type.py | 934 |
| run_Cosmic_10_mutations_slurm.sh | 866 |
| check_COSMIC_genes.py | 789 |
| test_HLA_split.sh | 497 |
| slurm_test_out
| 487 |