| Filename |
Size |
| unflitered_BAMs_hisat2_alignment
| 209.1G |
| filtered_align_bam
| 148.5G |
| sample_folders
| 11.3G |
| splice_dice_nostrand_3reads_allClusters.tsv | 2.3G |
| gencode.v46.annotation.gtf | 1.5G |
| getASEventReadCounts
| 585.7M |
| splice_dice_nostrand_junction_beds
| 265.0M |
| JuncBasePairwise
| 171.8M |
| splice_dice_nostrand_3reads_allPS.tsv | 40.5M |
| JuncBaseEventReadCounts_112124_AS_exclusion_inclusion_counts.txt | 30.9M |
| JuncBaseEventReadCounts_112124_AS_exclusion_inclusion_counts_lenNorm.txt | 29.8M |
| wt_dmso_vs_s34f_dmso_splice_dice_annotated | 25.0M |
| splice_dice_nostrand_3reads_inclusionCounts.tsv | 23.2M |
| wt_dmso_vs_s34f_csc_splice_dice | 22.4M |
| wt_dmso_vs_wt_csc_splice_dice | 22.1M |
| wt_dmso_vs_s34f_dmso_splice_dice | 22.1M |
| splice_dice_nostrand_3reads_junctions.bed | 16.1M |
| JuncBaseEventReadCounts_112124_right_intron_counts.txt | 7.5M |
| JuncBaseEventReadCounts_112124_left_intron_counts.txt | 7.5M |
| JuncBaseEventReadCounts_112124_right_intron_counts_lenNorm.txt | 7.3M |
| JuncBaseEventReadCounts_112124_left_intron_counts_lenNorm.txt | 7.3M |
| JuncBase_wtDMSOvswtCSC_PSI.tsv | 6.7M |
| JuncBase_wtDMSOvs_s34fCSC_PSI.tsv | 6.5M |
| JuncBase_wtDMSOvs_s34fDMSO_PSI.tsv | 6.2M |
| jbdisambiguatelog.txt | 1.2M |
| jbstep3log.txt | 324.5K |
| getascountslog.txt | 21.9K |
| splice_dice_nostrand_manifest.txt | 2.4K |
| u2af1csc_bam_manifest.txt | 2.1K |
| making_manifests.py | 1.7K |
| u2af1csc_samp2bam_docker.txt | 1.2K |
| control_manifest.txt | 1.2K |
| mutant_manifest.txt | 1.2K |
| bam_to_bed_splice_dice.py | 870 |
| DMSO_manifest.txt | 624 |
| CSC_manifest.txt | 620 |
| dmso_mutant_manifest.txt | 620 |
| csc_mutant_manifest.txt | 616 |
| samplemanifest.txt | 144 |
| wt_dmso_vs_s34f_csc_splice_dice_annotated | 89 |