| Filename |
Size |
| JAFFA_REFERENCE_FILES_HG38_GENCODE22.V2.tar.gz | 4.8G |
| hg38.fa | 3.0G |
| tools
| 982.8M |
| Masked_hg38.1.bt2 | 938.7M |
| Masked_hg38.rev.1.bt2 | 938.7M |
| Masked_hg38.rev.2.bt2 | 698.4M |
| Masked_hg38.2.bt2 | 698.4M |
| Masked_hg38.4.bt2 | 698.4M |
| hg38_genCode22.fa | 307.2M |
| hg38_genCode22.1.bt2 | 124.8M |
| hg38_genCode22.rev.1.bt2 | 124.8M |
| hg38_genCode22_blast.nsq | 71.0M |
| hg38_genCode22.rev.2.bt2 | 70.8M |
| hg38_genCode22.2.bt2 | 70.8M |
| hg38_genCode22.4.bt2 | 70.8M |
| hg38_genCode22.tab | 40.9M |
| hg38_genCode22_blast.nhr | 35.3M |
| Masked_hg38.3.bt2 | 2.6M |
| hg38_genCode22_blast.nin | 2.2M |
| hg38_genCode22.3.bt2 | 1.7M |
| known_fusions.txt | 399.2K |
| COPYING | 34.3K |
| src
| 32.1K |
| JAFFA_stages.groovy | 20.1K |
| make_final_table.R | 17.1K |
| docker
| 14.2K |
| install_linux64.sh | 5.8K |
| cwl
| 4.4K |
| JAFFAL.groovy | 2.6K |
| scripts
| 2.4K |
| compile_results.R | 2.4K |
| assemble.sh | 2.2K |
| JAFFA_hybrid.groovy | 1.6K |
| get_spanning_reads.R | 1.6K |
| JAFFA_direct.groovy | 1.4K |
| tools.groovy | 1.3K |
| JAFFA_assembly.groovy | 1.1K |
| LICENSE | 818 |
| README.md | 713 |
| README | 618 |